Fundamental Limitations of Genomic Foundation Models for Sequence Generation
Oral presentation
Event: AGBT General Meeting
Location: Orlando, FL, USA
Date: February 2026
🧬PhD in Bioinformatics and Genomics
Aug 2023 – Jan 2026
The Pennsylvania State University
M.Sc. in Artificial Intelligence
Sep 2020 – Jul 2023
KU Leuven
B.Sc. in Mathematics
Oct 2013 – Mar 2018
Aristotle University of Thessaloniki
I’m a computational biologist working at the intersection of AI and genomics, with a particular focus on understanding and ensuring the safety of foundation models in biology.
My academic journey has taken me from mathematics to artificial intelligence, then to bioinformatics, and now back to AI with a focus on safety and foundation models in biology. Along the way, I’ve lived and worked in four different countries and worn many hats: from co-founding a cancer diagnostics startup to building research infrastructure from scratch, and from developing open-source bioinformatics tools to training genomic language models.
What drives my work is a conviction that as AI systems become increasingly capable, we need robust frameworks to evaluate their safety. Whether I’m assessing data poisoning vulnerabilities in genomic models or benchmarking the capabilities of state-of-the-art systems like Evo 2, I’m focused on ensuring these powerful tools advance science responsibly.
I’m passionate about mentorship and collaborative science. I’ve had the privilege of guiding researchers from their first steps in bioinformatics to their first publications, and I thrive in environments that balance rigorous research with the rapid iteration of startup culture.
When I’m not analyzing petabytes of genomic data, you’ll find me jogging in Austin or learning new languages.
Oral presentation
Event: AGBT General Meeting
Location: Orlando, FL, USA
Date: February 2026
Oral presentation
Event: Center for Molecular Carcinogenesis and Toxicology Symposium
Location: Austin, TX, USA
Date: December 2025
Attendance: ~50 attendees
Poster pitch and poster presentation
Event: Revolutionizing Next-Generation Sequencing
Location: Antwerp, Belgium
Date: March 2025
Attendance: ~300 attendees
Oral presentation
Event: AGBT General Meeting
Location: Marco Island, FL, USA
Date: February 2025
Attendance: ~250 attendees
Poster presentation
Event: Biology of Genomes
Location: Cold Spring Harbor, NY, USA
Date: May 2024
Email: ioannis.mouratidis [at] austin.utexas.edu
Location: Austin, Texas
I’m always open to discussing research collaborations, consulting opportunities, or mentoring in bioinformatics and machine learning.