Publications

* first or co-first author ✉ corresponding author (project supervision)
Ioannis Mouratidis, Maxwell A Konnaris, Nikol Chantzi, Candace SY Chan, Michail Patsakis, Kimonas Provatas, Austin Montgomery, Fotis A Baltoumas, Congzhou M Sha, Manvita Mareboina, et al. (2025). Identification of the shortest species-specific oligonucleotide sequences. Genome research.
DOI *✉
Austin Montgomery, Georgios Christos Tsiatsianis, Ioannis Mouratidis, Candace SY Chan, Maria Athanasiou, Anastasios D Papanastasiou, Verena Kantere, Nikos Syrigos, Ioannis Vathiotis, Konstantinos Syrigos, et al. (2024). Utilizing nullomers in cell-free RNA for early cancer detection. Cancer gene therapy.
DOI
Nikol Chantzi, Manvita Mareboina, Maxwell A Konnaris, Austin Montgomery, Michail Patsakis, Ioannis Mouratidis, Ilias Georgakopoulos-Soares (2024). The determinants of the rarity of nucleic and peptide short sequences in nature. NAR Genomics and Bioinformatics.
DOI ✉
Georgios Christos Tsiatsianis, Candace SY Chan, Ioannis Mouratidis, Nikol Chantzi, Anna Maria Tsiatsiani, Nelson S Yee, Apostolos Zaravinos, Verena Kantere, Ilias Georgakopoulos-Soares (2024). Peptide absent sequences emerging in human cancers. European Journal of Cancer.
DOI
Kimonas Provatas, Nikol Chantzi, Michail Patsakis, Akshatha Nayak, Ioannis Mouratidis, Ilias Georgakopoulos-Soares (2024). Microsatellites explorer: A database of short tandem repeats across genomes. Computational and Structural Biotechnology Journal.
DOI
Ioannis Mouratidis, Fotis A Baltoumas, Nikol Chantzi, Michail Patsakis, Candace SY Chan, Austin Montgomery, Maxwell A Konnaris, Eleni Aplakidou, George C Georgakopoulos, Anshuman Das, et al. (2024). kmerDB: a database encompassing the set of genomic and proteomic sequence information for each species. Computational and structural biotechnology journal.
DOI *
Nikol Chantzi, Camille Moeckel, Candace S Y Chan, Akshatha Nayak, Guliang Wang, Ioannis Mouratidis, Dionysios Chartoumpekis, Karen M Vasquez, Ilias Georgakopoulos-Soares (2024). Characterization of hairpin loops and cruciforms across 118,065 genomes spanning the tree of life. bioRxiv.
DOI
Camille Moeckel, Ioannis Mouratidis, Nikol Chantzi, Yasin Uzun, Ilias Georgakopoulos-Soares (2024). Advances in computational and experimental approaches for deciphering transcriptional regulatory networks. BioEssays.
DOI
Camille Moeckel, Manvita Mareboina, Maxwell A Konnaris, Candace SY Chan, Ioannis Mouratidis, Austin Montgomery, Nikol Chantzi, Georgios A Pavlopoulos, Ilias Georgakopoulos-Soares (2024). A survey of k-mer methods and applications in bioinformatics. Computational and Structural Biotechnology Journal.
DOI
Manvita Mareboina, Elen Deng, Ioannis Mouratidis, Nelson S Yee, Nelly Pitteloud, Ilias Georgakopoulos-Soares, Dionysios V Chartoumpekis (2024). A review on cell-free RNA profiling: Insights into metabolic diseases and predictive value for bariatric surgery outcomes. Molecular metabolism.
DOI