kmerDB: A database encompassing the set of genomic and proteomic sequence information for each species
Jan 2024·
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1 min read
Ioannis Mouratidis
Equal contribution
,F. a. baltoumas
Equal contribution
,N. chantzi
Equal contribution
,Et al.
Abstract
We present kmerDB, a comprehensive database consolidating genomic and proteomic k-mer information across all species in Genbank and UniProt. This resource enables rapid species identification and comparative genomic studies.
Type
Publication
Computational and Structural Biotechnology Journal, 23
kmerDB provides the research community with a powerful tool for k-mer based species identification, comparative genomics, and evolutionary studies.
Authors
Ioannis Mouratidis
(he/him)
Senior Research Engineer/Scientist Associate
Machine learning and genomics researcher with 35 publications (10 first or senior author).
Co-founded AI-driven cancer biomarker startup, authored grants securing $4M+ in competitive funding
and currently lead a 5-member team with a focus in developing novel computational methods and testing
the capabilities and safety profiles of biological foundation models.
Authors
Authors
Authors